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List of publications

Kruse S, Goris T, Westermann M, Adrian L, Diekert G.
Hydrogen production by Sulfurospirillum species enables syntrophic interactions of Epsilonproteobacteria.
Nat Commun. 2018 Nov 19;9(1):4872. doi: 10.1038/s41467-018-07342-3.

Jin B, Nijenhuis I, Rolle M.
Simulation of dual carbon–bromine stable isotope fractionation during 1,2-dibromoethane degradation.
Isotopes Environ Health Stud. 2018 Aug;54(4):418-434. doi: 10.1080/10256016.2018.1468759. Epub 2018 Jun 1..

Rischer M, Raguž L, Guo H, Keiff F, Diekert G, Goris T, Beemelmanns C.
Biosynthesis, Synthesis, and Activities of Barnesin A, a NRPS-PKS Hybrid Produced by an Anaerobic Epsilonproteobacterium.
ACS Chem Biol. 2018 Aug 17;13(8):1990-1995. doi: 10.1021/acschembio.8b00445.

Lechner U, Türkowsky D, Dinh TTH, Al-Fathi H, Schwoch S, Franke S, Gerlach MS, Koch M, von Bergen M, Jehmlich N, Dang TCH.
Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill.
Microb Biotechnol. 2018 Aug 16. doi: 10.1111/1751-7915.13301. [Epub ahead of print]

Franke S, Kümmel S, Nijenhuis I.
Liquid chromatography/isotope ratio mass spectrometry analysis of halogenated benzoates for characterization of the underlying degradation reaction in Thauera chlorobenzoica CB-1T.
Rapid Commun Mass Spectrom. 2018 Jun 15;32(11):906-912. doi: 10.1002/rcm.8113.

Tiedt O, Fuchs J, Eisenreich W, Boll M.
A catalytically versatile benzoyl-CoA reductase, key enzyme in the degradation of methyl- and halobenzoates in denitrifying bacteria.
J Biol Chem. 2018 Jun 29;293(26):10264-10274. doi: 10.1074/jbc.RA118.003329. Epub 2018 May 16.

Seidel K, Kühnert J, Adrian L.
The Complexome of Dehalococcoides mccartyi Reveals Its Organohalide Respiration-Complex Is Modular.
Front Microbiol. 2018 Jun 12;9:1130. doi: 10.3389/fmicb.2018.01130. eCollection 2018.

Türkowsky D, Lohmann P, Mühlenbrink M, Schubert T, Adrian L, Goris T, Jehmlich N, von Bergen M.
Thermal Proteome Profiling allows Quantitative Assessment of Interactions between Tetrachloroethene Reductive Dehalogenase and Trichloroethene.
J Proteomics. 2018 Jun 4. pii: S1874-3919(18)30230-6. doi: 10.1016/j.jprot.2018.05.018. [Epub ahead of print]

Türkowsky D, Esken J, Goris T, Schubert T, Diekert G, Jehmlich N, von Bergen M.
A Retentive Memory of Tetrachloroethene Respiration in Sulfurospirillum halorespirans - involved Proteins and a possible link to Acetylation of a Two-Component Regulatory System.
J Proteomics. 2018 Jun 15;181:36-46. doi: 10.1016/j.jprot.2018.03.030.

Holliger C, Nijenhuis I.
Editorial: Special issue on anaerobic biological dehalogenation..
FEMS Microbiol Ecol. 2018 June, 94(6). doi: 10.1093/femsec/fiy054.

Schubert T, Adrian L, Sawers RG, Diekert G.
Organohalide respiratory chains: composition, topology and key enzymes.
FEMS Microbiol Ecol. 2018 April, 94(4). doi: 10.1093/femsec/fiy035.

Buttet GF, Murray AM, Goris T, Burion M, Jin B, Rolle M, Holliger C, Maillard J.
Coexistence of two distinct Sulfurospirillum populations respiring tetrachloroethene - genomic and kinetic considerations.
FEMS Microbiol Ecol. 2018 May, 94(5). doi: 10.1093/femsec/fiy018.

Keller S, Kunze C, Bommer M, Paetz C, Menezes RC, Svatoš A, Dobbek H, Schubert T.
Selective utilization of benzimidazolyl-norcobamides as cofactors by the tetrachloroethene reductive dehalogenase of Sulfurospirillum multivorans.
J Bacteriol. 2018 Jan 29 (Epub ahead of print). pii: JB.00584-17. doi: 10.1128/JB.00584-17.

Türkowsky D, Jehmlich N, Diekert G, Adrian L, von Bergen M, Goris T
An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research.
FEMS Microbiol Ecol. 2018 Jan 30 (Epub ahead of print). doi: 10.1093/femsec/fiy013.

Nijenhuis I, Stollberg R, Lechner U
Anaerobic microbial dehalogenation and its key players in the contaminated Bitterfeld-Wolfen megasite.
FEMS Microbiol Ecol. 2018 Jan 29 (Epub ahead of print). doi: 10.1093/femsec/fiy012.

Tiedt O, Mergelsberg M, Eisenreich W, Boll M
Promiscuous Defluorinating Enoyl-CoA Hydratases/Hydrolases Allow for Complete Anaerobic Degradation of 2-Fluorobenzoate
Front. Microbiol., 21 December 2017 (Epub ahead of print) DOI: 10.3389/fmicb.2017.02579.

Gadkari J, Goris T, Schiffmann CL, Rubick R, Adrian L, Schubert T, Diekert G
Reductive tetrachloroethene dehalogenation in the presence of oxygen by Sulfurospirillum multivorans: Physiological studies and proteome analysis
FEMS Microbiol Ecol, 2017 Dec 22 (Epub ahead of print) DOI:

Franke S, Lihl C, Renpenning J, Elsner M, Nijenhuis I
Triple-element compound-specific stable isotope analysis of 1,2-dichloroethane for characterization of the underlying dehalogenation reaction in two Dehalococcoides mccartyi strains
FEMS Microbiol Ecol, 2017 Oct 22 (Epub ahead of print) DOI: 10.1093/femsec/fix137.

Kruse T, Goris T, Maillard J, Woyke T, Lechner U, de Vos W, Smidt H
Comparative genomics of the genus Desulfitobacterium
FEMS Microbiol Ecol, 2017 Oct 11 (Epub ahead of print) DOI: 10.1093/femsec/fix135.

Kunze C, Diekert G, Schubert T
Subtle changes in the active site architecture untangled overlapping substrate ranges and mechanistic differences of two reductive dehalogenases
FEBS J, 2017 Sep 15 (Epub ahead of print) DOI: 10.1111/febs.14258.

Kunze C, Bommer M, Hagen WR, Uksa M, Dobbek H, Schubert T, Diekert G
Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer
Nat Comm, 2017 Jul 3 (Epub ahead of print) DOI: 10.1038/ncomms15858.

Hartwig S, Dragomirova N, Kublik A, Türkowsky D, von Bergen M, Lechner U, Adrian L, Sawers RG
A H2-Oxidizing, 1,2,3-Trichlorobenzene-Reducing Multienzyme Complex Isolated from the Obligately Organohalide-Respiring Bacterium Dehalococcoides mccartyi Strain CBDB1
Env Microbiol Rep, 2017 Jun 19 (Epub ahead of print) DOI: 10.1111/1758-2229.12560.

Goris T, Schenz B, Zimmermann J, Lemos M, Hackermüller J, Schubert T, Diekert G.
The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum multivorans.
J Biotech. 2017 Jun 22;255C pp. 33-36 DOI: 10.1016/j.jbiotec.2017.06.1197.

Kruse S, Goris T, Wolf M, Wei X, Diekert G.
The NiFe Hydrogenases of the Tetrachloroethene-Respiring Epsilonproteobacterium Sulfurospirillum multivorans: Biochemical Studies and Transcription Analysis.
Front Microbiol. 2017 Mar 20; DOI: 10.3389/fmicb.2017.00444.

Mortan SH, Martín-González L, Vicent T, Caminal G, Nijenhuis I, Adrian L, Marco-Urrea E.
Detoxification of 1,1,2-trichloroethane to ethene in a bioreactor co-culture of Dehalogenimonas and Dehalococcoides mccartyi strains.
J Haz Mat. 2017 Feb 27; DOI: 10.1016/j.jhazmat.2017.02.043. [Epub ahead of print]

Zhang S, Wondrousch D, Cooper M, Zinder SH, Schüürmann G, Adrian L.
Anaerobic Dehalogenation of Chloroanilines by Dehalococcoides mccartyi Strain CBDB1 and Dehalobacter Strain 14DCB1 via Different Pathways as Related to Molecular Electronic Structure.
Environ Sci Technol. 2017 Feb 24; DOI: 10.1021/acs.est.6b05730. [Epub ahead of print]

Frauenstein D, Seidel K, Adrian L.
SandTraps are efficient, scalable, and mild systems for harvesting, washing and concentrating cells.
J Microbiol Methods. 2016 Nov 27;132:106-111. doi: 10.1016/j.mimet.2016.11.018. [Epub ahead of print]

Krasper L, Lilie H, Kublik A, Adrian L, Golbik R, Lechner U.
The MarR-type regulator Rdh2R regulates rdh gene transcription in Dehalococcoides mccartyi strain CBDB1.
J Bac. 2016 Sep 12, doi: 10.1128/JB.00419-16 [Epub ahead of print]

Siritanaratkul B, Islam STA, Schubert T, Kunze C, Goris T, Diekert G, Armstrong FA.
Selective, light-driven enzymatic dehalogenations of organic compounds
RSC Adv. 2016, 6, 84882-84886

Adrian L, Löffler FE. (Eds.)
Book: Organohalide-Respiring Bacteria
Springer, Heidelberg Berlin, 2016

containing the following chapters with contributions from the FOR 1530 members:

Adrian L, Löffler FE.
Organohalide-Respiring Bacteria-An Introduction. pp. 3-6

Goris T, Diekert G.
The Genus Sulfurospirillum. pp. 209-234

Kruse T, Smidt H, Lechner U.
Comparative Genomics and Transcriptomics of Organohalide-Respiring Bacteria and Regulation of rdh Gene Transcription. pp. 345-376

Schubert T, Diekert G.
Comparative Biochemistry of Organohalide Respiration. pp. 397-428

Renpenning J, Nijenhuis I.
Evaluation of the Microbial Reductive Dehalogenation Reaction Using Compound-Specific Stable Isotope Analysis (CSIA). pp. 429-454

Adrian L, Löffler FE.
Outlook-The Next Frontiers for Research on Organohalide-Respiring Bacteria. pp. 621-628


Goris T, Schiffmann CL, Gadkari J, Adrian L, von Bergen M, Diekert G, Jehmlich N.
Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Data Brief. 2016 Jun 21;8:637-42. doi: 10.1016/j.dib.2016.06.022. eCollection 2016 Sep.

Schiffmann CL, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M, Jehmlich N.
Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
Data Brief. 2016 Feb 22;7:253-6. doi: 10.1016/j.dib.2016.02.037. eCollection 2016 Jun.

Tiedt O, Mergelsberg M, Boll K, Müller M, Adrian L, Jehmlich N, von Bergen M, Boll M.
ATP-Dependent C-F Bond Cleavage Allows the Complete Degradation of 4-Fluoroaromatics without Oxygen
MBio. 2016 Aug 9;7(4). pii: e00990-16. doi: 10.1128/mBio.00990-16.

Adrian L, Marco-Urrea E.
Isotopes in geobiochemistry: tracing metabolic pathways in microorganisms of environmental relevance with stable isotopes
Curr Op Biotech. 2016, October, Vol 41 pp. 19-25., doi:10.1016/j.copbio.2016.03.018

Nijenhuis I, Kuntze K.
Anaerobic microbial dehalogenation of organohalides - state of the art and remediation strategies
Curr Op Biotech. 2016, April, Vol 38 pp. 33-38., doi:10.1016/j.copbio.2015.11.009

Kublik A, Deobald D, Hartwig S, Schiffmann CL, Andrades A, von Bergen M, Sawers RG, Adrian L.
Identification of a multiprotein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement
Environ Microbiol. 2015 Dec 31., doi:10.1111/1462-2920.13200

Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G.
Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates
Sci. Rep. 2015, (5)13794, Sep 21, doi:10.1038/srep13794

Hartwig S, Thomas C, Krumova N, Quitzke V, Türkowsky D, Jehmlich N, Adrian L, Sawers RG
Heterologous Complementation Studies in Escherichia coli with the Hyp Accessory Protein Machinery from Chloroflexi Provide Insight into [NiFe]-Hydrogenase Large Subunit Recognition by the HypC Protein Family
Microbiol, 2015 Sep 11 (Epub ahead of print) DOI: 10.1099/mic.0.000177.

Martín-González L, Hatijah Mortan S, Rosell M, Parladé E, Martínez-Alonso M, Gaju N, Caminal G, Adrian L, Marco-Urrea E
Stable carbon isotope fractionation during 1,2-dichloropropaneto-propene transformation by an enrichment culture containing Dehalogenimonas strains and a dcpA gene.
Environ Sci Technol, 2015 June 25 (Epub ahead of print) DOI: 10.1021/acs.est.5b00929.

Yang C, Kublik A, Weidauer C, Seiwert B, Adrian L
Reductive dehalogenation of oligocyclic phenolic bromoaromatics by Dehalococcoides mccartyi strain CBDB1.
Environ Sci Technol, 2015 June 23 (Epub ahead of print) DOI: 10.1021/acs.est.5b01401.

Cooper M, Wagner A, Wondrousch D, Sonntag F, Sonnabend A, Brehm M, Schüürmann G, Adrian L
Anaerobic Microbial Transformation of Halogenated Aromatics and Fate Prediction Using Electron Density Modeling.
Environ Sci Technol, 2015 49(19), pp 6018-6028. DOI: 10.1021/acs.est.5b00303. Apr 24,2015

Hartwig S, Pinske C, Sawers RG.
Chromogenic assessment of the three molybdo-selenoprotein formate dehydrogenases in Escherichia coli
Biochem Biophys Rep. 2015, (1)pp62-67, mar 30, doi:10.1016/j.bbrep.2015.03.006

Renpenning J, Rapp I, Nijenhuis I.
Substrate hydrophobicity and cell composition influence the extent of rate limitation and masking of isotope fractionation during microbial reductive dehalogenation of chlorinated ethenes.
Environ Sci Technol, 2015 Mar 3. DOI: 10.1021/es506108j. [Epub ahead of print]

Goris T, Hornung B, Kruse T, Reinhold A, Westermann W, Schaap PJ, Smidt H, Diekert G.
Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.
Standards in Genomic Sciences 2015, 10:15, doi:10.1186/1944-3277-10-15

Renpenning J, Hitzfeld KL, Gilevska T, Nijenhuis I, Gehre M, Richnow HH.
Development and Validation of an Universal Interface for Compound-Specific Stable Isotope Analysis of Chlorine (37Cl/35Cl) by GC-High-Temperature Conversion (HTC)-MS/IRMS.
Anal. Chem., 2015, 87 (5), pp 2832-2839 DOI: 10.1021/ac504232u

Pöritz M, Schiffmann CL, Hause G, Heinemann U, Seifert J, Jehmlich N, von Bergen M, Nijenhuis I, Lechner U.
Dehalococcoides mccartyi strain DCMB5 Respires a Broad Spectrum of Chlorinated Aromatic Compounds.
Appl Environ Microbiol, 2014 Nov 7. pii: AEM.02597-14. [Epub ahead of print]

Bommer M, Kunze C, Fesseler J, Schubert T, Diekert G, Dobbek H.
Structural basis for organohalide respiration.
Science, Epub ahead of print, DOI: 10.1126/science.1258118

Renpenning J, Keller S, Cretnik S, Shouakar-Stash O, Elsner M, Schubert T, Nijenhuis I.
Combined C and Cl isotope effects indicate differences between corrinoids and enzyme (Sulfurospirillum multivorans PceA) in reductive dehalogenation of tetrachloroethene, but not trichloroethene.
Environ Sci Technol 2014, 48 (20) 11837-11845, DOI: 10.1021/es503306g

Goris T, Schubert T, Gadkari J, Wubet T, Tarkka M, Buscot F, Adrian L, Diekert G.
Insights into organohalide respiration and the versatile catabolism of Sulfurospirillum multivorans gained from comparative genomics and physiological studies
Environ. Microbiol 2014, August, Epub ahead of print, doi:10.1111/1462-2920.12589

Mac Nelly A, Kai M, Svatos A, Diekert G, Schubert T.
Functional heterologous Production of Reductive Dehalogenases from Desulfitobacterium hafniense strains
Appl. Environ. Microbiol 2014 Jul 2014 vol. 80 no. 14, 4313-4322 doi:10.1128/AEM.00881-14

Selected as a spotlight in the July 2014 Issue of Applied and Environmental Microbiology (see Articles of Significant Interest Selected from This Issue)

Schmidt M, Lege S, Nijenhuis I.
Comparison of 1,2-dichloroethane, dichloroethene and vinyl chloride carbon stable isotope fractionation during dechlorination by two Dehalococcoides strains
Water Res. 2014 Jan 8. (Epub ahead of print) doi:10.1016/j.watres.2013.12.042

Schiffmann CL, Jehmlich N, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M.
Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor
J Proteomics. 2013 Dec 25;98C:59-64 (Epub ahead of print) doi:10.1016/j.jprot.2013.12.009

Schiffmann C, Hansen R, Baumann S, Kublik A, Nielsen PH, Adrian L, von Bergen M, Jehmlich N, Seifert J.
Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
Anal Bioanal Chem. 2013 Nov 13. (Epub ahead of print) doi:10.1007/s00216-013-7451-7

Seifert J, Herbst FA, Nielsen PH, Planes FJ, Jehmlich N, Ferrer M, von Bergen M.
Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities
Anal Proteomics. 2013 Aug 7. doi:10.1002/pmic.201200566

von Bergen M, Jehmlich N, Taubert M, Vogt C, Bastida F, Herbst FA, Schmidt F, Richnow HH, Seifert J.
Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology
ISME J. 7, 1877–1885, 2013 May 16. doi:10.1038/ismej.2013.78

Pöritz M, Goris T, Wubet T, Tarkka MT, Buscot F, Nijenhuis I, Lechner U, Adrian L.
Genome sequences of two dehalogenation specialists - Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region
FEMS Microbiol Lett. 2013 Apr 19. (Epub ahead of print) doi:10.1111/1574-6968.12160

Leys D, Adrian L, Smidt H.
Organohalide respiration: microbes breathing chlorinated molecules
Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120316

Schipp CJ, Marco-Urrea E, Kublik A, Seifert J, Adrian L.
Organic cofactors in the metabolism of Dehalococcoides mccartyi strains
Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120321

Hug LA, Maphosa F, Leys D, Löffler FE, Smidt H, Edwards EA, Adrian L.
Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases
Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120322

Wagner A, Segler L, Kleinsteuber S, Sawers G, Smidt H, Lechner U.
Regulation of reductive dehalogenase gene transcription in Dehalococcoides mccartyi
Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120317

Tang S,Chan WW, Fletcher KE, Seifert J, Liang X, Löffler FE, Edwards EA, Adrian L.
Functional Characterization of Reductive Dehalogenases Using Blue Native Polyacrylamide Gel Electrophoresis
Appl. Environ. Microbiol. 2012 Nov 30 (Epub ahead of print) doi: 10.1128/AEM.01873-12

Duan TH, Adrian L.
Enrichment of hexachlorobenzene and 1,3,5-trichlorobenzene transforming bacteria from sediments in Germany and Vietnam
Biodegradation 2012 Nov 30 (Epub ahead of print) doi: 10.1007/s10532-012-9607-0

Reinhold A, Westermann M, Seifert J, von Bergen M, Schubert T, Diekert G.
Impact of vitamin B12 on the formation of the tetrachloroethene reductive dehalogenase in Desulfitobacterium hafniense strain Y51.
Appl. Environ. Microbiol. 2012 Sep 7 (Epub ahead of print) doi: 10.1128/AEM.02173-12

Wagner A, Cooper M, Ferdi S, Seifert J, Adrian L.
Growth of Dehalococcoides mccartyi strain CBDB1 by reductive dehalogenation of brominated benzenes to benzene
Environ. Sci. Technol. 2012 Jul 16 (Epub ahead of print) doi: 10.1021/es3003519

Marco-Urrea E, Seifert J, von Bergen M, Adrian L.
Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1

J Bacteriol. 2012 Jun 1. (Epub ahead of print)

Seifert J, Taubert M, Jehmlich N, Schmidt F, Völker U, Vogt C, Richnow HH, von Bergen M.
Protein-based stable isotope probing (protein-SIP) in functional metaproteomics
Mass Spectrom Rev. 2012, Mar 15 doi: 10.10002/mas.21346 (Epub ahead of print)

Marco-Urrea E, Paul S, Khodaverdi V, Seifert J, von Bergen M, Kretzschmar U, Adrian L.
Identification and Characterization of a Re-Citrate Synthase in Dehalococcoides Strain CBDB1
J Bacteriol. 2011, Oct;193(19):5171-8

Kuntze K, Kiefer P, Baumann S, Seifert J, von Bergen M, Vorholt J.A, Boll M.
Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates
Mol. Microbiol. 2011, Nov;82(3):758-69